Download e-book for iPad: Exploration and Analysis of DNA Microarray and Protein Array by Dhammika Amaratunga

By Dhammika Amaratunga

ISBN-10: 0471273988

ISBN-13: 9780471273981

This publication presents a very good review of assorted equipment in DNA microarray research. It explains many of the theories in the back of the algorithms, so you recognize why the analyses are performed in convinced means. in reality, i locate i am getting extra insights from the publication as evaluate to the learn papers which are usually short.

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Extra resources for Exploration and Analysis of DNA Microarray and Protein Array Data

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2 Sample Preparation The labeled sample is prepared separately. The first step here is to purify mRNA from total cellular contents. , the cells of solid tumors), the more difficult it is to isolate mRNA specific to the study, and ( 3 ) captured mRNA degrades very quickly. As far as the latter is concerned, in order to prevent the experimental samples from being lost, the mRNA is immediately reverse-transcribed into more stable cDNA (for cDNA microarrays) or cRNA (for oligonucleotide arrays-cRNA is synthetic RNA produced by transcription from a single-stranded DNA template).

2. Explain the function of (a) DNA, (b) mRNA, (c) start and stop codons in protein synthesis. 3. Explain how a child of parents, both of whom are blood type A, could be blood type 0. 4. Discuss some ways in which developments in genomics could alter the practice of medicine. Exploration and Analysis of DNA Microarray and Protein Array Data Edited by DHAMMIKA AMARATUNGA and JAVIER CABRERA Copyright 02004 by John Wiley & Sons, Inc CHAPTER 3 Microarrays The state of a cell at any given time is governed by which subset of its genes is expressed at that time.

As a result the overlaid grid will need some fine-tuning, which can be done by manipulating the rows and columns of the overlaid grid until the it is satisfactorily aligned. Care must be taken that speckles and dust, which can fluoresce as brightly as a spot, do not confuse the procedure. A somewhat more rigorous method would be to first locally smooth the image using a Gaussian kernel, designate the modes of the smoothed regions as the spot centers, and then modify the grid so that the distances from the spot centers to the centers of the rectangular or square regions containing each spot are minimized.

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Exploration and Analysis of DNA Microarray and Protein Array Data by Dhammika Amaratunga


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