Download e-book for kindle: Analysis of Microarray Gene Expression Data by Mei-Ling Ting Lee

By Mei-Ling Ting Lee

ISBN-10: 1402077882

ISBN-13: 9781402077883

After genomic sequencing, microarray know-how has emerged as a time-honored platform for genomic reports within the lifestyles sciences. Microarray know-how offers a scientific option to survey DNA and RNA edition. With the abundance of information made out of microarray reviews, in spite of the fact that, the final word effect of the experiences on biology will rely seriously on info mining and statistical research. The contribution of this ebook is to supply readers with an built-in presentation of assorted themes on studying microarray data.

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The RNA to be separated is loaded into a gel-like solid support consisting of an agarose polymer. Upon application of a current, the RNA molecules will migrate in the gel due to their phosphate backbone negative charge. A long molecule will migrate slowly through the agarose gel, while a short molecule will mi­ grate quickly. After allowing the RNA molecules to separate for a while, the electrophoresis is stopped and the fractionated RNA is transferred from the agarose gel to a membrane support (Northern blotting) by capillary transfer.

Because of the many sources of variability in microarray experiments, the statistical analysis is crucial for successful interpretation of the biological phenomena under study. To perform meaningful statistical analysis of microarray data, one must understand the format of the microarray data and how to interpret the data. The microarray data format for in-situ oligonucleotide arrays is very different compared to that of spotted microarrays, and each data format has its own analysis and interpretation requirements.

In contrast, for either spotted cDNA arrays or spotted oligonucleotide arrays, a test and a reference sample labeled with two different fluorescent dyes are commonly simultaneously hybridized on the same arrays. 8). 3. Probe Selection and Synthesis For large-scale gene expression studies, the first step is to select and prepare the specific hybridization detectors (probes). cDNA microarray technology provides great flexibility in the choice and production of ordered arrays, since the probes can be created from cDNA libraries.

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Analysis of Microarray Gene Expression Data by Mei-Ling Ting Lee

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